Sitka Spruce: hierarchical data browser

Sitka Spruce is a general-purpose data browser for hierarchical datasets stored in HDF5 files or Zarr folders. It allows interactive plotting of scientific data using combining wxPython , wxmplot, and matplotlib.

For goals and motivation for Sitka, see Motivation for Sitka Spruce.

• Downloading and Installation
  • Prerequisites
  • Installation
  • Development Version
  • Installation from Source
  • Creating the Desktop Shortcut
  • License
• Using Sitka
  • Running the Sitka GUI
    • Using the command-line sitka program
    • Creating and Using a Desktop shortcut
    • Running Sitka from a Python shell or Jupyter Notebook
  • Basic Usage of the Sitka GUI
    • Overview of the main Sitka Window
    • Saving Arrays by Name
    • Copying the Array Address
    • Exporting Group/Dataset Metadata
    • The Dimension Reduction Panel
    • A note on speed of Array Selection
• The Image Display Page
• The XY Plot Display Page
• The Table Display Page
• The Named Arrays Page
• Motivation for Sitka Spruce